Lets take a look at a different reaction:
HCN <=> CNH
We can see that the hydrogen attached to the carbon migrates over to the nitrogen. This could happen by changing the angle HCN from 180° to 0°. So a logical transition state is:
Now we can go through step-by-step calculation and explanation of the many attributes of the computational chemistry software. We will address three major software packages in out step-through example, please choose the program you have available to use:
If you are using the program Spartan click on the logo below:
If you are using Gaussian click on the logo below: