User Input and Settings
=======================

The following sections detail the input to Snipper, as well as the settings supplied.

SNPs
----

+------------+------------+-----------+
|    SNP     | Chromosome |  Position |
+============+============+===========+
| rs13292136 |    chr9    |  81952128 |
+------------+------------+-----------+
| rs4607103  |    chr3    |  64711904 |
+------------+------------+-----------+
|  rs757210  |   chr17    |  36096515 |
+------------+------------+-----------+
|  rs972283  |    chr7    | 130466854 |
+------------+------------+-----------+
| rs1801282  |    chr3    |  12393125 |
+------------+------------+-----------+
| rs12779790 |   chr10    |  12328010 |
+------------+------------+-----------+
| rs2237892  |   chr11    |  2839751  |
+------------+------------+-----------+
| rs10923931 |    chr1    | 120517959 |
+------------+------------+-----------+
| rs7578597  |    chr2    |  43732823 |
+------------+------------+-----------+
| rs1470579  |    chr3    | 185529080 |
+------------+------------+-----------+
| rs7754840  |    chr6    |  20661250 |
+------------+------------+-----------+
|   rs5215   |   chr11    |  17408630 |
+------------+------------+-----------+
| rs9939609  |   chr16    |  53820527 |
+------------+------------+-----------+
| rs2943641  |    chr2    | 227093745 |
+------------+------------+-----------+
| rs1111875  |   chr10    |  94462882 |
+------------+------------+-----------+
|  rs864745  |    chr7    |  28180556 |
+------------+------------+-----------+
| rs4457053  |    chr5    |  76424949 |
+------------+------------+-----------+
| rs3020789  |    chrX    | 152892987 |
+------------+------------+-----------+
| rs10830963 |   chr11    |  92708710 |
+------------+------------+-----------+
| rs10811661 |    chr9    |  22134094 |
+------------+------------+-----------+
|  rs243021  |    chr2    |  60584819 |
+------------+------------+-----------+
| rs11634397 |   chr15    |  80432222 |
+------------+------------+-----------+
| rs7903146  |   chr10    | 114758349 |
+------------+------------+-----------+
| rs8042680  |   chr15    |  91521337 |
+------------+------------+-----------+
| rs7961581  |   chr12    |  71663102 |
+------------+------------+-----------+
|  rs231362  |   chr11    |  2691471  |
+------------+------------+-----------+
| rs13266634 |    chr8    | 118184783 |
+------------+------------+-----------+
| rs1552224  |   chr11    |  72433098 |
+------------+------------+-----------+
|  rs896854  |    chr8    |  95960511 |
+------------+------------+-----------+
| rs10010131 |    chr4    |  6292915  |
+------------+------------+-----------+
| rs7957197  |   chr12    | 121460686 |
+------------+------------+-----------+
| rs1531343  |   chr12    |  66174894 |
+------------+------------+-----------+

Regions
-------

No regions given by the user.

Genes
-----

No genes explicitly requested by the user.

Parameters
----------

+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                     Parameter                      |                                                                                                                                                                             Value                                                                                                                                                                             |
+====================================================+===============================================================================================================================================================================================================================================================================================================================================================+
|                    List of SNPs                    | rs13292136, rs4607103, rs757210, rs972283, rs1801282, rs12779790, rs2237892, rs10923931, rs7578597, rs1470579, rs7754840, rs5215, rs9939609, rs2943641, rs1111875, rs864745, rs4457053, rs3020789, rs10830963, rs10811661, rs243021, rs11634397, rs7903146, rs8042680, rs7961581, rs231362, rs13266634, rs1552224, rs896854, rs10010131, rs7957197, rs1531343 |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|          Distance to search from each SNP          |                                                                                                                                                                             250000                                                                                                                                                                            |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|      Number of genes to return near each SNP       |                                                                                                                                                                              9999                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                    Search terms                    |                                                                                                                                                                   diabetes, insulin, glucose                                                                                                                                                                  |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                        OMIM                        |                                                                                                                                                                              True                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                       PubMed                       |                                                                                                                                                                              True                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| Maximum number of recent PubMed articles to return |                                                                                                                                                                               10                                                                                                                                                                              |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|  Search for each (search term)*(gene) combination  |                                                                                                                                                                             False                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                      GeneRIF                       |                                                                                                                                                                              True                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                       ScanDB                       |                                                                                                                                                                              True                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|              ScanDB P-value threshold              |                                                                                                                                                                             1e-05                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                        MiMI                        |                                                                                                                                                                              True                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|          Build for SNP and gene positions          |                                                                                                                                                                              hg19                                                                                                                                                                             |
+----------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+