SLAT: Set Level Association Testing

SLAT is a free software for association testing on a set level. SLAT assigns a measure of significance to pre-defined sets of markers in the genome. The sets can be genes, conserved regions, or groups of genes such as pathways.

Current release: version 1.0 (released in July, 2009)

Download: Please click here to download

Documentation: [PDF]

Sample input files: can be viewed and downloaded here

Questions and bug reports: should be addressed to wen at galton dot uchicago dot edu

References:
1. "Gene, region and pathway level analyses in whole-genome studies" Genetic Epidemiology, (accepted).