Song Lab

Department of Biostatistics

Publications

Recent Featured Publications

  1. Chan, LS, Li, G, Fauman, EB, Yin, X, Lasskso, M, Boehnke, M and Song, PXK (2024). DrFARM: Identification and inference for pleiotropic gene in GWAS. Nature Communications, to appear.
  2. Banker, M, Zhang, L and Song (2024). Regularized scalar-on-function regression analysis to assess functional association of critical physical activity window with biological age. Annals of Applied Statistics 18(4): 2730-2752.
  3. Wang, W, Wu, S, Zhu, Z, Zhou, L and Song, PXK (2024). Supervised homogeneity fusion: A combinatorial approach. Annals of Statistics 52(1) 285-310.
  4. He, Y, Song, PXK and Xu, G (2024). Adaptive Bootstrap Tests for Composite Null Hypotheses in the Mediation Pathway Analysis. Journal of the Royal Statistical Society Series B 86 411-434.
  5. Banker, M and Song, PXK (2023). Supervised Learning of Physical Activity Features from Functional Accelerometer Data. IEEE Journal of Biomedical and Health Informatics 27(12), 5710-5721. [Supplementary Material]
  6. Shi, L, Wank, M, Chen, Y, Wang, Y, Hector, E and Song, PXK (2023). Sleep classification with artificial synthetic imaging data using convolutional neural networks. IEEE Journal of Biomedical and Health Informatics.27, 421-432.
  7. Luo, L, Zhou, L and Song, PXK (2023). Real-time regression analysis of streaming clustered data with possible abnormal data batches. Journal of the American Statistical Association 118, 2029-2044.
  8. Hao, W and Song, PXK (2023). A simultaneous likelihood test for joint mediation effects of multiple mediators. Statistica Sinica 33, 2305-2326.
  9. Naiman, J and Song, PXK (2022). Multivariate functional kernel machine regression and sparse functional feature selection. Entropy 24, 203.
  10. Zhou, L, She, X and Song, PXK (2023). Distributed Empirical Likelihood Approach to Integrating Unbalanced Datasets. Statistica Sinica 33, 2209-2231.
  11. Wang, F, Zhou, L, Tang, L and Song, PXK (2021). Method of contraction-expansion for simultaneous inference in linear model. (download it here) Journal of Machine Learning Research 22(192), 1-32.
  12. Hector, E and Song, PXK (2021+). Joint integrative analysis of multiple data sources with correlated vector outcomes. Annals of Applied Statistis 6(3), 1700-1717.
  13. Zhou, Y, Song, PXK and Fu, H (2021). Net Benefit Index: Assessing the Influence of a Biomarker for Individualized Treatment Rules. Biometrics 77, 1254-1264.
  14. Hector, E and Song, PXK (2020). Doubly distributed supervised learning and inference with high-dimensional correlated outcomes. Journal of Machine Learning Research 21, 1-35.
  15. Zhou, Y, Wang, L, Zhang, L, Shi, L, Yang, K, He, J, Zhao, B, Overton, W, Purkayastha, S, and Song, PXK (2020). A spatiotemporal epidemiological prediction model to inform county-level covid-19 risk in the USA. [available here] Harvard Data Science Review, appeared in the Special Issue 1 - COVID-19.
  16. Tang, L, Zhou, Y, Wang, L, Purkayastha, S, Zhang, L, He, J, Wang, F and Song, PXK (2020). A review of multi-compartment infectious disease models. International Statistical Review 88(2), 462-513.
  17. Wang, L, Zhou, Y, He, J, Zhu, B, Wang, F, Tang, L, Kleinsasser, M, Daniel Barker, D Eisenberg, M and Song, PXK (2020). An epidemiological forecast model and software assessing interventions on COVID-19 epidemic in China (with discussion). Journal of Data Science 18, 409-432.
  18. Tang, L and Song, PXK (2020+). Post-stratification fusion learning in longitudinal data analysis. Biometrics, to appear.
  19. Zhou, Y, Song, PXK and Wen, X (2020+). Structural factor equation models for causal network construction via directed acyclic mixed graphics. Biometrics, to appear.
  20. Hector, EC and Song, PXK (2021). A distributed and Integrated Method of Moments for High-Dimensional Correlated Data Analysis. Journal of the American Statistical Association 116 (534), 805-818.
  21. Tang, L, Zhou, L and Song, PXK (2019+). Distributed Simultaneous Inference in Generalized Linear Models via Confidence Distribution (an early version available on arXiv) . Journal of Multivariate Analysis, to appear.
  22. Fang, Y, Scott, L, Song, PXK, Burmeister, M and Sen, S (2020). Genomic prediction of depression risk and resilience under stress. Nature Human Behaviour 4, 111-118.
  23. Luo, L. and Song, P.X.K. (2020). Renewable Estimation and Incremental Inference in Generalized Linear Models with Streaming Datasets. Journal of the Royal Statistical Society: Series B (Statistical Methodology) 82, 69-97.
  24. Shin, YE, Sang, H, Liu, D, Ferguson, TA and Song, PXK (2019+). Autologistic Network Model on Binary Data for Disease Progression Study. Biometrics, online advanced access DOI: 10.1111/biom.13111.
  25. Luo, L., She, X., Cao, J., Zhang, Y., Li, Y. and Song, P.X.K. (2019). Detection and prediction of ovulation from body temperature measured by an in-ear wearable thermometer. IEEE Transactions on Biomedical Engineering, advanced online access, DOI:10.1109/TBME.2019.2916823. [Article by a journalist from IEEE Spectrum].
  26. Baek, J., Zhu, B. and Song, P.X.K. (2019). Bayesian analysis of infant's growth dynamics with in utero exposure to environmental toxicants.. Annals of Applied Statistics, 13, 297-320.
  27. Tang, L., and Song, P.X.K. (2016). Fused lasso approach in regression coefficients clustering – Learning parameter heterogeneity in data integration. Journal of Machine Learning Research, 17(113), 1-23.
  28. Zhou,Y. and Song, P.X.K. (2016). Regression analysis of networked data. Biometrika, 103(2), 287-301.
  29. Wang, F., Wang, L. and Song, P.X.K. (2016). Fused lasso with the adaptation of parameter ordering in combining multiple studies with repeated measurements. Biometrics, 72, 1184-1193.

Other Featured Publications

  1. Song, P.X.K. (2007). Correlated data analysis: modeling, analytics, and applications. Springer: New York. [Link] [Table of Contents] [Book Webpage/Supplementary Material]
  2. Bray, M., Wang, W., Song, P.X.K., Leichtman, A.B., Rees, M.A., Ashby, V.B., Eikstadt, R., Goulding, A. and Kalbfleisch, J.D. (2015). Planning for uncertainty and fallbacks can increase the number of transplants in a kidney paired donation program. American Journal of Transplantation, 15(10), 2636-2645.
  3. Ju, W., Nair, V., Smith, S., Zhu, L., Shedden, K., Song, P.X.K., Mariani, L.H., Eichinger, F.H., Berthier, C.C., Randolph, A., Lai, J. Y.-C., Zhou, Y., Hawkins, J.J., Bitzer, M., Sampson, M., Thier, M., Solier, C., Duran-Pacheco, G.C., Duchateau-Nguyen, G., Essioux, L., Schott, B., Formentini, I., Magnone, M.C., Bobadilla, M., Cohen, C.D., Bagnasco, S.M., Barisoni, L., Lv, J., Zhang, H., Wang, H.-Y., Brosius, F.C., Gadegbeku, C.A. and Kretzler, M., for the ERCB, C-PROBE, NEPTUNE and PKU-IgAN Consortium. (2015). Tissue transcriptome-driven identification of epidermal growth factor as a chronic kidney disease biomarker. Science Translational Medicine, 7(316), 316ra193-316ra193.
  4. Ma, S., and Song, P.X.K. (2015). Varying index coefficient models. Journal of the American Statistical Association, 110(509), 341-356.
  5. Bai, Y., Song, P.X.K., and Raghunathan, T.E. (2012). Joint composite estimating functions in spatiotemporal models. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 74(5), 799-824.
  6. Song, P.X.K., Fan, Y., and Kalbfleisch, J.D. (2005). Maximization by parts in likelihood inference (with discussion). Journal of the American Statistical Association, 100(472), 1145-1158.
  7. Song, P.X.K. (2000). Multivariate dispersion models generated from Gaussian copula. Scandinavian Journal of Statistics, 27(2), 305-320.

All Journal Publications

*Click header to sort column
# Reference Title Journal Year Link
1 Wang, W., Bray, M., Song, P.X.K. and Kalbfleisch, J.D. (2018). An efficient algorithm to enumerate sets with fallbacks in a kidney paired donation program.   Operations Research in Health Care (to appear) 2018 [Link]
2 Zhou, L., Li, H., Lin, H. and Song, P.X.-K. (2018). Evaluating functional covariate-environment interactions in the Cox regression model. Canadian Journal of Statistics (to appear) 2018 [Link]
3 Tang, L, Zhou, L and Song, P.X.-K..  Fusion Learning Algorithm to Combine Partially Heterogeneous Cox Models. Computational Statistics (to appear) 2018 [Link]
4 Baek, J., Zhu, B. and Song, P.X.-K.  Bayesian analysis of infant's growth dynamics with in utero exposure to environmental toxicants. Annals of Applied Statistics (to appear) 2018 [Link]
5 Perng, W., Baek, J., Zhou, C.W., Cantoral, A., Tellez-Rojo, M.M., Song, PX.K. and Peterson, K. E.   Associations of the infancy body mass index peak with anthropometry and cardiometabolic risk in Mexican adolescents. Annals of Human Biology (to appear) 2018 [Link]
6 Li, Y., Wang, S., Song, P.X.K., Wang, N., Zhou, L. and Zhu, J.  Doubly regularized estimation and selection in linear mixed-effects models for high-dimensional longitudinal data. Statistics and Its Interface (to appear) 2018 [Link]
7 Patel, M.R., Song, P.X.K., Jean-Marie Bruzzese, J., Hao, W., Evans, D., Thomas, L.J., Pinkett-Heller, Meyerson, K., NP-C, AE-C and Brown, R.W. Does cross-cultural communication training for physicians improve pediatric asthma outcomes? A randomized trial. Journal of Asthma (to appear) 2018 [Link]
8 Werzowa, J, Saemann, M.D., Mohl, A., Bergmann, M., Kaltenecker, C.C, Brozek, W., Thomas, A., Haidinger, M., Antlanger, M. Kovarik, J.J. Kpecky, C., Song, P.X.K., Budde, K., Pascual, J. and Hecking, M. A randomized controlled trial-based algorithm for insulin-pump therapy in hyperglycemic patients early after kidney transplantation. PLoS ONE 2018 [Link]
9 Jensen, E., Zhou, L. et al. Prenatal lead exposure in relation to age at menarche: results from a longitudinal study in Mexico City. Journal of Developmental Origins of Health and Disease (to appear) 2018 [Link]
10 Bray, M., Wang, W., Song, P.X.K. and Kalbfleisch, J. Valuing sets of potential transplants in a kidney paired donation network. Statistics in Biosciences (to appear) 2018 [Link]
11 Bennett, G.H., Carpenter, L., Hao, W., Song, P.X.K., Steinberg, J. and Baptist, A.P. Risk factors and clinical outcomes associated with fixed airflow obstruction in older adults with asthma. Annals of Allergy, Asthma & Immunology (to appear) 2017 [Link]
12 Perng, W., Hector, E.C., Song, P.X.K., Tellez Rojo, M.M., Raskind, S., Kachman, M., Cantoral, A., Burant, C.F. and Peterson, K.E.  Metabolomic Determinants of Metabolic Risk in Mexican Adolescents. Obesity 2017 [Link]
13 Baptist, A.P., Hao, W., Karamched, K.R., Kaur, B., Carpenter, L. and Song, P.X.K. Distinct asthma phenotypes among older adults with asthma. The Journal of Allergy and Clinical Immunology: In Practice 2017 [Link]
14 Ashby, V., Leichtman, A., Rees, M., Song, P.X.K., Bray, M., Wang, W. and Kalbfleisch, J.  A kidney graft survival calculator that accounts for mismatches in age, sex, HLA and body size. Clinical Journal of the American Society of Nephrology 2017 [Link]
15 Zhang, S., Zhou, Q.M., Zhu,  D. and Song, P.X.K. Goodness-of-fit test in multivariate jump diffusion models. Journal of Business & Economic Statistics 2017 [Link]
16 Kalmbach, D.A., Arnedt, J.T., Song, P.X.K., Guille, C. and Sen, S. Sleep disturbance and short sleep as risk factors for depression and perceived medical errors in first-year residents. Sleep 2017 [Link]
17 Patel, M.R., Song, P.X.K., Sanders, G., Nelson, B.W., Kaltsas, E., Thomas, L.J., Janevic, M.R., Hafeez, K., Wang, W., Wilkin, M., Johnson, T.R. and Brown, R.W. A randomized trial of a culturally-responsive intervention for African American women with asthma.  Annals of Asthma, Allergy, and Immunology 2016 [Link]
18 Moynihan, M., Peterson, K.E., Cantoral, A., Song, P.X.K., Jones, A., Solano-González, M., Meeker, J.D., Basu, N. and Tellez-Rojo, M.M. Dietary predictors of urinary cadmium among pregnant women and children. Science of the Total Environment 2016 [Link]
19 Zhou, Y., Wang, P., Wang, X., Zhu, J. and Song, P.X.K. Sparse multivariate factor analysis regression models and its applications to integrative genomics analysis. Genetic Epidemiology 2016 [Link]
20 Marchlewicz, E.H., Dolinoy, D.C., Tang, L., Milewski, S., Jones, T.R., Goodrich, J.M., Soni, T., Domino, S.E., Song, P.X.K., Burant, C. and Padmanabhan, V. Lipid metabolism is associated with developmental epigenetic programming. Scientific Reports 2016 [Link]
21 Zhou, L., Tang, L., Song, A.T., Cibrik, D. and Song, P.X.K. A LASSO method to identify protein signature predicting post-transplant renal graft survival. Statistics in Biosciences 2016 [Link]
22 Tang, L. and Song, P.X.K. Fused Lasso approach in regression coefficients clustering - Learning parameter heterogeneity in data integration. Journal of Machine Learning Research 2016 [Link]
23 Zhong, P., Lan, W., Song, P.X.K. and Tsai, C. Tests for covariance structures with high-dimensional repeated measurements. Annals of Statistics 2016 [Link]
24 Wang, W., Bray, M., Song, P.X.K. and Kalbfleisch, J.D. A look-ahead strategy for non-directed donors in kidney paired donation. Statistics in Biosciences 2016 [Link]
25 Zhou,Y. and Song, P.X.K. Regression analysis of networked data. Biometrika 2016 [Link]
26 Wang, F., Wang, L. and Song, P.X.K. Fused Lasso with the adaptation of parameter ordering in combining multiple studies with repeated measurements. Biometrics 2016 [Link]
27 Sanchez, B, Wu, M., Song, P.X.K. and Wang, W. Study design in high-dimensional classification analysis. Biostatistics 2016 [Link]
28 Lu, X., Pordeli, P., Burke, M. and Song, P.X.K. Partially linear single-index proportional hazards model with current status data. Journal of Multivariate Analysis 2016 [Link]
29 Zhang, S., Okhrin, O., Zhou, Q.M. and Song, P.X.K. Goodness-of-fit test for specification of semiparametric copula dependence models. Journal of Econometrics 2016 [Link]
30 Ding, W. and Song, P.X.K. EM algorithm in Gaussian copula with missing data. Computational Statistics and Data Analysis 2016 [Link]
31 Han, P., Wang, L. and Song, P.X.K. Doubly robust and locally efficient estimation with missing outcomes. Statistica Sinica 2016 [Link]
32 M. Sampson, C. Robertson, S. Martini, L. Mariani, K. Lemley, C. Gillies, E.Otto, J.B. Kopp, A. Randolph, V. Vega-Warner, F. Eichinger, V. Nair, D. S. Gipson, D. Cattran, D. Johnstone, J. O'Toole, S. Bagnasco, P.X.K. Song, L. Barisoni, J. Troost, M. Kretzler1, J. Sedor and the Nephrotic Syndrome Study Network. Integrative genomics identifies novel associations with APOL1 risk genotype in African American NEPTUNE subjects. Journal of the American Society of Nephrology 2016 [Link]
33 DS Gipson, JP Troost, R Lafayette, MA Hladunewich, H Trachtman, CA Gadegbeku, JR Sedor, LB Holzman, MM Moxey-Mims, K Perumal, FJ Kaskel, PJ Nelson, KR Tuttle, SM Bagnasco, MC Hogan, KM Dell, GB Appel, JC Lieske, TO Ilori, CB Sethna, FC Fervenza, SL Hogan, PH Nachman, AZ Rosenberg, LA Greenbaum, KE Meyers, SM Hewitt, MJ Choi, JB Kopp, O Zhdanova, JB Hodgin, DB Johnstone, SG Adler, C Avila-Casado, AM Neu, SR Hingorani, KV Lemley, CC Nast, TM Brady, L Barisoni, A Fornoni, JC Jennette, DC Cattran, MB Palmer, KL Gibson, HN Reich, MH Mokrzycki, KK Sambandam, GE Zilleruelo, C Licht, MG Sampson, P.X.K. Song, LH Mariani and M Kretzler. Complete Remission in the Nephrotic Syndrome Study Network. Clinical Journal of the American Society of Nephrology 2016 [Link]
34 L Barisoni, J Troost, C Nast, S Bagnasco, C Avila-Casado, J Hodgin, M Palmer, A Rosenberg, A Gasim, C Liensziewski, L Merlino, A Chang, S Meehan, J Gaut, P.X.K. Song, L Holzman, D Gibson, M Kretzler, B Gillespie and S Hewitt. Reproducibility of the NEPTUNE descriptor-based scoring system on whole slide images and histologic and ultrastructural digital images. Modern Pathology 2016 [Link]
35 Lemley, K.V., Bagnasco, S.M., Nast, C.C., Barisoni, L. Conway, C.M., Hewitt, S.M. and Song, P.X.K. Morphometry Predicts Early GFR Change in Primary Proteinuric Glomerulopathies: A longitudinal cohort study using generalized estimating equations.  PLoS ONE 2016 [Link]
36 Janevic, M., Stoll, S., Wilkin, M. Song, P.X.K., Baptist, A., Lara, M., Ramos-Valencia, G., Stephens, T.B., Persky, V., Uyeda, K., Lesch, J.K., Wang, W. and Malveaux,F.J. Pediatric asthma care coordination in underserved communities: A quasi-experimental study. American Journal of Public Health 2016 [Link]
37 Ma, S. and Song, P.X.K. Varying index coefficient models. Journal of the American Statistical Association 2015 [Link]
38 Lu, X. and Song, P.X.K. Efficient Estimation of the Partly Linear Additive Hazards Model with Current Status Data.  Scandinavian Journal of Statistics 2015 [Link]
39 Wang, F., Song, P.X.K. and Wang, L. Merging multiple longitudinal studies with study-specific missing covariates: A joint estimating function approach.  Biometrics 2015 [Link]
40 Bray, M. and Song, P.X.K. Comment on "Statistical modelling of citation exchange between statistical journals by C. Varin, M. Cattelan and D. Firth".  Journal of the Royal Statistical Society Series A 2015 [Link]
41 Bray M., Wang W., Song, P.X.K., Leichtman A. B., Rees M. A., Ashby V. B., Eikstadt R., Goulding A. and Kalbfleisch J. D. Planning for uncertainty and fallbacks can increase the number of transplants in a kidney paired donation program. American Journal of Transplanation 2015 [Link]
42 Zhou, Q.M., Song, P.X.K. and Thompson, M.E. Profiling heteroscedasticity in linear regression models.  Canadian Journal of Statistics 2015 [Link]
43 Feng, D., Song, P.X.K. and Tony S. Wirjanto. Time-deformation modeling of stock returns by duration processes.  Econometric Reviews 2015 [Link]
44 Han, P., Song, P.X.K. and Wang, L. Achieving semiparametric efficiency bound in longitudinal data analysis with dropouts.  Journal of Multivariate Analysis 2015 [Link]
45 D. T. Selewski, J. P. Troost, S. F. Massengill, R. A. Gbadegesin, L. A. Greenbaum, I. F. Shatat, Y. Cai, G. Kapur, D. Hebert, M. J. Somers, H. Trachtman, P. Pais, M. E. Seifert, J. Goebel, C. Sethna, J. D. Mahan, H. E. Gross, E. Herreshoff, Y. Liu, P.X.K. Song, B. B. Reeve, D. A. DeWalt, D. S. Gipson. The Impact of Disease Duration on Quality of Life in Children with Nephrotic Syndrome: a Midwest Pediatric Nephrology Consortium study Pediatric Nephrology. Pediatric Nephrology 2015 [Link]
46 R. Saran, Y. Li, B. Robinson, J. Ayanian, R. Balkrishnan, J. Bragg-Gresham, J.T. Chen, E. Cope, D. Gipson, K. He, W. Herman, M. Heung, R.A. Hirth, S.S. Jacobsen, K. Kalantar-Zadeh, C.P. Kovesdy, A.B. Leichtman, Y. Lu, M.Z. Molnar, H. Morgenstern, B. Nallamothu, A. M. O'Hare, R. Pisoni, B. Plattner, F.K. Port, P. Rao, C.M. Rhee, D.E. Schaubel, D.T. Selewski, V.Shahinian, J.J. Sim, P.X.K. Song, E. Streja, T.M. Kurella, F. Tentori, P.W. Eggers, L.Y. Agodoa, K.C. Abbott (2015). US Renal Data System 2014 Annual Data Report: Epidemiology of Kidney Disease in the United States. American Journal of Kidney Diseases 2015 [Link]
47 Ju, W., Nair, V., Smith, S., Zhu, L., Shedden, K., Song, P.X.K., Mariani, L.H., Eichinger, F.H., Berthier, C.C., Randolph, A., Lai, J. Y.-C., Zhou, Y., Hawkins, J.J., Bitzer, M., Sampson, M., Thier, M., Solier, C., Duran-Pacheco, G.C., Duchateau-Nguyen, G., Essioux, L., Schott, B., Formentini, I., Magnone, M.C., Bobadilla, M., Cohen, C.D., Bagnasco, S.M., Barisoni, L., Lv, J., Zhang, H., Wang, H.-Y., Brosius, F.C., Gadegbeku, C.A. and Kretzler, M., for the ERCB, C-PROBE, NEPTUNE and PKU-IgAN Consortium. Tissue Transcriptome-driven Identification of Epidermal Growth Factor as a Chronic Kidney Disease Biomarker.  Science Translational Medicine 2015 [Link]
48 Bai, Y., Kang, J. and Song, P.X.K. Efficient pairwise composite likelihood estimation for spatial-clustered data.  Biometrics 2014 [Link]
49 Han, P., Song, P.X.K., and Wang, L. Longitudinal Data Analysis Using the Conditional Empirical Likelihood Method.  Canadian Journal of Statistics 2014 [Link]
50 Li, Y., Song, P.X.K., Zhou, Y., Leichtman, A.B., Rees, M.A. and Kalbfleisch, J.D. Optimal Decisions for Organ Exchanges in a Kidney Paired Donation Program.  Statistics in Biosciences 2014 [Link]
51 Li, Y., Song, P.X.K., Leichtman, A.B., Rees, M.A. and Kalbeisch, J.D. Decision making in kidney paired donation programs with altruistic donors.  Statistics and Operations Research Transactions 2014 [Link]
52 Chen,Y., Berrocal, V., Bingham, R. and Song, P.X.K. Analysis of spatial variations in the effectiveness of graduated driver's licensing (GDL) program in the state of Michigan. Spatial and Spatio-temporal Epidemiology 2014 [Link]
53 Patel, M.R., Caldwell, C., Song, P.X.K. and Wheeler, J.R.C. Patient perceptions of asthma-related financial burden: public vs private health insurance in the United States.  Annals of Allergy, Asthma & Immunology 2014 [Link]
54 Lachance, L., Benedict, M.B., Doctor, J.L., Gilmore, L.A., Kelly, C., Krieger, J., Lara, M., Meurer, J., Milanovich, A.F., Nicholas, E., Rosenthal, M., Song, P.X.K., Stoll, S.C., Awad, D.F., Wilkin, M.K. and Clark, N.M. Asthma coalition effects on vulnerable sub groups of children: the most frequent users of health care and the youngest.  Journal of Asthma 2014 [Link]
55 Selewski, D. T. , Massengill, S. F., Troost, J., Wickman, L., Messer, K. L., Herreshoff, E., Bowers, C., Ferris, M. E., Mahan, J. D., Greenbaum, L. A., MacHardy, J., Kapur, G., Chand, D. H., Goebel, J., Barletta, G. M., Geary, D., Kershaw, D. B., Pan, C. G., Gbadegesin, R., Hidalgo, G., Lane, J. C., Leiser, J. D., Song, P.X.K., Thissen, D., Liu, Y., Gross, H. E., DeWalt, D. A., Gipson, D. S. Gaining the Patient Reported Outcomes Measurement Information System (PROMIS)Perspective in Chronic Kidney Disease: a Midwest Pediatric Nephrology Consortium study.  Pediatric Nephrology 2014 [Link]
56 Spinale, J.M., Mariani, L.H., Kapoor, S., Zhang, J., Weyant, R., Song, P.X.K., Wong, H.N., Troost, J.P., Gadegbeku, C.A., Gipson, D.S., Kretzler, M., Nihalani D. and Holzman,L.B. A reassessment of soluble urokinase-type plasminogen activator receptor in kidney disease.  Kidney International 2014 [Link]
57 Cheng, D., Song, P.X.K. and Liu, Z. Kidney paired donation system.  Chinese Journal of Nephrology, Dialysis & Transplantation 2014 [Link]
58 Ko, Y., Song, P.X.K. and Clark, N.M.(2013). Declines with Age in Childhood Asthma Symptoms and Health Care Use: An Adjustment for Evaluations. This paper is dedicated to the memory of our wonderful colleague Dr. Noreen M. Clark who passed away recently. Annals of the American Thoracic Society 2013 [Link]
59 Baptist, A.P., Ross, J.A., Yang, Y., Song, P.X.K. and Clark, N.M. A randomized controlled trial of a self-regulation intervention for older adults with asthma.  Journal of the American Geriatrics Society 2013 [Link]
60 Song, P.X.K., Li, M. and Zhang, P. Vector Generalized Linear Models: A Gaussian Copula Approach. Copulae in Mathematical and Quantitative Finance edited by P. Jaworski, F. Durante and W.K. Hardle, 239-264,  Springer: Berlin. 2013 [Link]
61 Barrantes, F., Luan, F. L., Kommareddi, M., Alazem, K., Yaqub, T., Roth, R. S., Sung, R. S., Cibrik, D. M., Song, P.X.K. and Samaniego, M. History of Chronic Opioid Usage and Clinical Outcomes Post Kidney Transplantation.  Kidney International 2013 [Link]
62 Alba, J.D., Song, P.X.K. and Wang, P. Is There a Positive Association between M&A and Non-M&A FDI? Firm-level Evidence from Japanese FDI into US.  Singapore Economic Review 2013 [Link]
63 Gipson, D.S., Selewski, D.T., Massengill, S.F., Wickman, L., Messer, K.L., Herreshoff, E., Corinna, B., Ferris, M.F., Mahan, J.D., Greenbaum, L.A., MacHardy, J., Kapur, G., Chand, D.H., Goebel, J., Baletta, J.M. Geary, D., Kershaw, D.B., Pan, C.G., Gbadegesin, R., Hidalgo, G., Lane, J.C. Leiser, J.D., Plattner, B.W., Song, P.X.K., Thissen, D., Liu, Y., Gross, H.M. and DeWalt, D.A. Gaining the PROMIS Perspective from Children with Nephrotic Syndrome: a Midwest Pediatric Nephrology Consortium Study.  Health and Quality of Life Outcomes 2013 [Link]
64 Wickman, L., Afshinnia, F., Wang, S.Q., Yang, A., Wang, F., Chowdhury, M., Graham, D., Hawkins, J., Nishizono, R., Tanzer, M., Wiggins, J., Escobar, J.A., Rovin, B., Song, P.X.K., Gipson, D., Kershaw, D. and Wiggins, R.C. Urine podocyte mRNAs, proteinuria and progression in human glomerular diseases.  Journal of the American Society of Nephrology 2013 [Link]
65 Cibrik, D.M., Warner, R.L., Kommareddi, M., Song, P.X.K. Luan, F.L. and Johnson, K.J. Identification of a protein signature in renal allograft rejection.  Proteomics Clinical Applications 2013 [Link]
66 Bai, Y., Song, P.X.K. and Raghunathan, T.E. Joint composite estimating functions in spatio-temporal models.  Journal of the Royal Statistical Society Series B 2012 [Link]
67 Wang, F., Wang, L. and Song, P.X.K. Quadratic Inference Function Approach to Merging Longitudinal Studies: Validation Test and Joint Estimation.  Biometrika 2012 [Link]
68 Zhou, Q.M., Song, P.X.K. and Thompson, M.E. Information ratio test for model misspecification in quasi-likelihood inference.  Journal of the American Statistical Association 2012 [Link]
69 Zhang, S., Song, P.X.K., Shi, D. and Zhou, Q.M. Information ratio test for model misspecification on parametric structures in stochastic diffusion models.  Computational Statistics and Data Analysis 2012 [Link]
70 Chen, Y., Li, Y., Kalbfleisch, J.D., Zhou, Y., Leichtman, A. and Song, P.X.K. Graph-based optimization algorithm and software on kidney exchanges.  IEEE Transaction on Biomedical Engineering 2012 [Link]
71 Kang, J., Ye, W, Wang, L., Veiga-Lopez, A., Padmanabhan, V. and Song, P.X.K. Local Mixed-Effects Fitting for Detecting Reproductive Hormone Surge Times.  Statistics in Biosciences 2012 [Link]
72 Song, P.X.K., Freeland, R.K., Biswas, A. and Zhang, S. Statistical analysis of discrete-valued time series using categorical ARMA models.  Computational Statistics and Data Analysis 2012 [Link]
73 Hu, Y. and Song, P.X.K. Sample size determination for quadratic inference functions in longitudinal design with dichotomous outcomes.  Statistics in Medicine 2012 [Link]
74 Lu, X. and Song, P.X.K. On efficient estimation in additive hazards regression with current status data.  Computational Statistics and Data Analysis 2012 [Link]
75 C. A. Gadegbeku, D. S. Gipson, L. Holzman, A. O. Ojo, P.X.K. Song, L. Barisoni, M. G. Sampson, J. Kopp, K. Lemley, P. Nelson, C. Lienczewski, S. Adler, G. Appel, D. Cattran, M. Choi, G. Contreras, K. Dell, F. Fervenza, K. Gibson, L. Greenbaum, J. Hernandez, S. Hewitt, S. Hingorani, M. Hladunewich, M. Hogan, S. Hogan, F. Kaskel, J. Lieske, K. E.C. Meyers, P. Nachman, C. Nast, A. Neu, H. Reich, J. Sedor, C. Sethna, H. Trachtman, K. Tuttle, O. Zhdanova, G. Zilleruello, M. Kretzler. Design of the Nephrotic Syndrome Study Network (NEPTUNE): A Multi-Disciplinary Approach to Understanding Primary Glomerular Nephropathy.  Kidney Internaltional 2012 [Link]
76 Clark, N.M., Lachance, L., Benedict, B., Doctor, J.L., Gilmore, L., Kelly, C., Krieger, J., Lara, M. Meurer, J., Milanovich, A. F., Nicholas, E., Song, P.X.K., Rosenthal, M., Stoll, S.C., Wilkin, M. Improvements in health care use associated with community coalitions: Long term results of the Allies Against Asthma Initiative.  American Journal of Public Health 2012 [Link]
77 Tanzer, M., Tran, C., Messer, K., Kroeker, A., Herreshoff, E., Wickman, L. Harkness, C., Song, P.X.K. and Gipson, D. Inpatient healthcare utilization by children and adolescents with systematic lupus erythematosus and kidney involvement.  Arthritis Care & Research 2012 [Link]
78 Tran, C.L., Ehrmann, B.J. Messer, K.L., Herreshoffa, E., Kroekera, A., Wickman, L., Song, P.X.K., Kaspera, N. and Gipson, D.S. Recent trends in healthcare utilization among children and adolescents with hypertension in the United States.  Hypertension 2012 [Link]
79 Heung, M., Wolfgram,D, Kommareddi, M., Hu, Y., Song, P.X.K. and Ojo, A. Fluid overload at initiation of renal replacement therapy is associated with lack of renal recovery in patients with acute kidney injury.  Nephrology Dialysis Transplantation 2012 [Link]
80 Clark, N.M., Baptist, A.P., Ko, Y., Leo, H.L. and Song, P.X.K. The relationship of season of birth to asthma and allergy in urban African American children 10 to 13 years of age. Journal of Asthma 2012 [Link]
81 Ross, J., Yang, Y., Song, P.X.K., Clark, N.M. and Baptist, A.P. Quality of Life, Health Care Utilization, and Control in Older Adults with Asthma.  Journal of Allergy and Clinical Immunology 2012 [Link]
82 Gipson, D.S., Messer, K.L., Tran, C.L. Herreshoff1, E.G., Samuel, G.P., Massengill,S.F., Song, P.X.K. and Selewski, D.T. Inpatient Healthcare Utilization in the United States Among Children with Nephrotic Syndrome.  American Journal of Kidney Diseases 2012 [Link]
83 Zhu, B., Taylor, J.M.G. and Song, P.X.K. Semiparametric stochastic modeling of the rate function in longitudinal studies.  Journal of the American Statistical Association 2011 [Link]
84 Zhu, B, Song, P.X.K. and Taylor, JMG. Stochastic functional data analysis: A diffusion model-based approach.  Biometrics 2011 [Link]
85 P.X.K. Song, M. Li and Y. Yuan. Rejoinder to "Joint regression analysis for discrete longitudinal data" by Madsen and Fang.  Biometrics 2011 [Link]
86 Chen, Y., Kalbfleisch, J.D., Li, Y., Song, P.X.K. and Zhou, Y. Computerized platform for optimal organ allocations in kidney exchanges.  BIOCOMP2011 Conference 2011 [Link]
87 Chen, Y. and Song, P.X.K. Computerized decision support system for kidney paired donation program.  Conf Proc IEEE Eng Med Biol Soc. 2011 [Link]
88 Qu, A., Yi, G.Y., Song, P.X.K. and Wang, P. Assessing the validity of weighted generalized estimating equations.  Biometrika 2011 [Link]
89 Gao, X and Song, P.X.K. Composite likelihood EM algorithm with applications to multivariate hidden Markov model.  Statistica Sinica 2011 [Link]
90 Han, P. and Song, P.X.K. A note on improving quadratic inference functions using linear shrinkage approach.  Statistics and Probability Letters 2011 [Link]
91 S.P. Norman, Song, P.X.K., Y. Hu and A.O. Ojo. Transition from donor candidates to live donors: The impact of race and undiagnosed medical disease states.  Clinical Transplantation 2011 [Link]
92 Gao, X and Song, P.X.K. Composite likelihood Bayesian information criteria for model selection in high dimensional data.  Journal of the American Statistical Association 2010 [Link]
93 Lin, H and Song, P.X.K. Longitudinal Semiparametric Transition Models with Unknown Link and Variance Functions.  Statistics and Its Interface 2010 [Link]
94 Lu, X, Nan, B, Song, P.X.K. and Mary Fran Sowers. Longitudinal Data Analysis with Event Time as a Covariate.  Statistics in Biosciences 2010 [Link]
95 Song, P.X.K., Li, M.  and  Yuan, Y.  Joint regression analysis of correlated data using Gussian copulas. Biometrics  2009 [Link]
96 Gao, X.,  Pu, D.Q. and Song, P.X.K.  Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data. EURASIP Journal on Bioinformatics and Systems Biology 2009 [Link]
97 Zhang, P., Qiu, Z., Fu, Y. and Song, P.X.K. Robust transformation mixed-effects models for longitudinal continuous proportional data.  Canadian Journal of Statistics 2009 [Link]
98 Biswas, A. and Song, P.X.K. Discrete-Valued ARMA Processes. Statistics and Probability Letters 2009 [Link]
99 Song, P.X.K., Jiang, Z.,  Park, E. and Qu, A. Quadratic inference functions in marginal models for longitudinal data Statistics in Medicine  2009 [Link]
100 Song, P.X.K. Dispersion Models in Regression Analysis. Pakistan Journal of Statistics (the special issue of Silver Jubilee Celebration) 2009 [Link]
101 Zhang, P.,  Song, P.X.K.,  Qu, A. and Greene, T. Efficient estimation for patient-specific rates of disease progression using non-normal linear mixed models. Biometrics 2008 [Link]
102 Czado, C. and Song, P.X.K. State Space Mixed Models for Longitudinal Observations with Binary and Binomial Responses. Statistical Papers 2008 [Link]
103 Qiu, Z., Song, P.X.K. and Tan, M.  Simplex Mixed-Effects Models for Longitudinal Proportional Data.  Scandinavian Journal of Statistics 2008 [Link]
104 Jorgensen, B. and Song, P.X.K. Stationary state space models for longitudinal data.  Canadian Journal of Statistics 2007 [Link]
105 Lin, H.,  Song, P.X.K. and Zhou, Q.M. Varying-Coefficient Marginal Models and Applications in Longitudinal Data Analysis. Sankhya 2007 [Link]
106 Zhang, P.,  Wang, X. and Song, P.X.K. Clustering categorical data based on distance vectors.  Journal of American Statistical Association  2006 [Link]
107 Lu, X., Chen, G.,  Singh, R. and Song, P.X.K.  A class of partially linear single-index survival models. Canadian Journal of Statistics 2006 [Link]
108 Song, P.X.K.,  Gao, X.,  Liu, R. and Le, W. Nonparametric Inference for Local Extrema With Application to Oligonucleotide Microarray Data in Yeast Genome.  Biometrics 2006 [Link]
109 Li, M., Boehnke, M.,  Abecasis, G. and Song, P.X.K. Quantitative Trait Linkage Analysis using Gaussian Copulas. Genetics  2006 [Link]
110 Jorgensen, B. and Song, P.X.K.  Diagnosis of stationarity in state space models for longitudinal data.  Far East Journal of Theoretical Statistics (Special Volume in Biostatistics and Related Topics) 2006 [Link]
111 Song, P.X.K. and Feng, D. On parameter estimation for exponential dispersion ARMA models.  Journal of Time Series Analysis 2005 [Link]
112 Song, P.X.K., Fan, Y. and Kalbfleisch, J.D. Maximization by parts in likelihood inference.  Journal of American Statistical Association (with discussion)  2005 [Link]
113 Song, P.X.K., Fan, Y. and Kalbfleisch, J.D. Rejoinder: Maximization by parts in likelihood inference.  Journal of American Statistical Association  2005 [Link]
114 Gao, X. and Song, P.X.K. Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments.  BMC Bioinformatics  2005 [Link]
115 Feng, D., Jiang, G. and Song, P.X.K.  Stochastic Conditional Duration Models with "Leverage Effect" for Financial Transaction Data.  Journal of Financial Econometrics  2004 [Link]
116 Clarke, B. and Song, P.X.K. Approximating dependence structures of repeated stochastic processes. Sankhya 2004 [Link]
117 Song, P.X.K.,  Qiu, Z. and Tan, M.  Modelling heterogeneous dispersion in marginal simplex models for longitudinal continuous proportional data. Biometrical Journal  2004 [Link]
118 Qu, A.and Song, P.X.K. Assessing robustness of generalized estimating equations and quadratic inference function. Biometrika 2004 [Link]
119 Song ,P.X.K., Qiu, Z. and Tan, M. Bayesian hierarchical analysis of multi-level repeated ordinal data using WinBUGS. Journal of Biopharmaceutical Statistics  2002 [Link]
120 Song, P.X.K. and Qu, A. Testing ignorable missingness in estimating equation approaches for longitudinal data. Biometrika 2002 [Link]
121 Sun, J. and Song, P.X.K. Statistical analysis of repeated measurements with informative cersoring times.  Statisticis in Medicine 2001 [Link]
122 Song, P.X.K. Multivariate dispersion models generated from Gaussian copula. Scandinavian Journal of Statistics 2000 [Link]
123 Song, P.X.K. and Tan, M. Marginal models for longitudinal continuous proportional data.  Biometrics  2000 [Link]
124 Song, P.X.K. Monte Carlo Kalman filter and smoothing for multivariate discrete state space models.  Canadian Journal of Statistics 2000 [Link]
125 Song, P.X.K. and Jiang, W. Assessing conditional independence for log-linear Poisson models with random effects. Communications in Statistics-Theory Meth 2000 [Link]
126 Jorgensne, B., Lundbye-Christensen, S., Song, P.X.K. and Sun, L. A state space model for multivariate longitudinal count data.  Biometrika 1999 [Link]
127 Jorgensne, B. and Song, P.X.K. Stationary time series models with exponential dispersion model margins.  Journal of Applied Probability 1998 [Link]
128 Song, P.X.K. Generating dependent random numbers with given correlations and margins from exponential dispersion models. Journal of Statistical Computation and Simulation 1997 [Link]
129 Jorgensne, B., Lundbye-Christensen, S., Song, P.X.K. and Sun, L. A longitudinal study of emergency room visits and air pollution for Prince George, British Columbia. Statistics in Medicine  1996 [Link]
130 Jorgensne, B., Lundbye-Christensen, S., Song, P.X.K. and Sun, L.  State space models for multivariate longitudinal data of mixed types. Canadian Journal of Statistics 1996 [Link]
131 Song, P.X.K. A proof of the recursion relation in the theory of orthogonal regression. (Chinese)  Math. Practice Theory 1993 [Link]
132 Song, P.X.K. The asymptotically optimal rate of an empirical Bayesian distribution function. (Chinese)  Journal of Systems Sciences and Mathematical Sciences 1993 [Link]
133 Song P.X.K. The linear empirical Bayes approach To multiple linear regression models. (Chinese) Acta Math. Appl. Sinica 1992 [Link]
134 Song, P.X.K. On multidimensional linear empirical Bayes estimation. (Chinese)  Journal of Mathematical Statistics and Applied Probability 1988 [Link]

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